From 3b0c27fcf1ea565999bc216e2bb91750b593f7af Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Fri, 17 Mar 2023 16:21:50 +0000
Subject: [PATCH] fix(writer): only create dset when nonexistent
---
src/agora/io/writer.py | 17 +++++++++--------
1 file changed, 9 insertions(+), 8 deletions(-)
diff --git a/src/agora/io/writer.py b/src/agora/io/writer.py
index bad7c198..71145f2f 100644
--- a/src/agora/io/writer.py
+++ b/src/agora/io/writer.py
@@ -570,14 +570,15 @@ class Writer(BridgeH5):
# create dataset and write time points as columns
tp_path = path + "/timepoint"
- f.create_dataset(
- name=tp_path,
- shape=(df.shape[1],),
- maxshape=(max_tps,),
- dtype="uint16",
- )
- tps = list(range(df.shape[1]))
- f[tp_path][tps] = tps
+ if tp_path not in f:
+ f.create_dataset(
+ name=tp_path,
+ shape=(df.shape[1],),
+ maxshape=(max_tps,),
+ dtype="uint16",
+ )
+ tps = list(range(df.shape[1]))
+ f[tp_path][tps] = tps
else:
f[path].attrs["columns"] = df.columns.tolist()
else:
--
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