diff --git a/pcore/pipeline.py b/pcore/pipeline.py index 841493b355a268238847eb244324167d8f0a6374..9a36aa77638585fd0de0c898362171bdfe865add 100644 --- a/pcore/pipeline.py +++ b/pcore/pipeline.py @@ -16,7 +16,7 @@ from agora.base import ParametersABC, ProcessABC from pcore.experiment import MetaData from pcore.io.omero import Dataset, Image from pcore.haystack import initialise_tf -from pcore.baby_client import DummyRunner +from pcore.baby_client import BabyRunner from pcore.segment import Tiler from pcore.io.writer import TilerWriter, BabyWriter from pcore.io.signal import Signal diff --git a/scripts/distributed_alan.py b/scripts/distributed_alan.py index fd89c2640da36d8fe4f05cb2cbdbf70b005e7531..28bb68bd30c50a03d251ed3e18f5ac8ea198b255 100644 --- a/scripts/distributed_alan.py +++ b/scripts/distributed_alan.py @@ -19,7 +19,7 @@ import operator from pcore.experiment import MetaData from pcore.io.omero import Dataset, Image from pcore.haystack import initialise_tf -from pcore.baby_client import DummyRunner +from pcore.baby_client import BabyRunner from pcore.segment import Tiler from pcore.io.writer import TilerWriter, BabyWriter from pcore.utils import timed @@ -79,7 +79,7 @@ def create_pipeline(image_id, **config): assert baby_config is not None # TODO add defaults tf_version = baby_config.get("tf_version", 2) session = initialise_tf(tf_version) - runner = DummyRunner(tiler) + runner = BabyRunner(tiler) bwriter = BabyWriter(filename) params = Parameters(**exparams_from_meta(filename)) ext = Extractor.from_tiler(params, store=filename, tiler=tiler)