From 6079eed3fd73b9ccaf259501d713517326757a2d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Mon, 21 Feb 2022 15:54:57 +0000
Subject: [PATCH] add parameters to metadata
---
aliby/pipeline.py | 8 ++++++--
1 file changed, 6 insertions(+), 2 deletions(-)
diff --git a/aliby/pipeline.py b/aliby/pipeline.py
index f39d5d20..f5458c46 100644
--- a/aliby/pipeline.py
+++ b/aliby/pipeline.py
@@ -256,8 +256,12 @@ class Pipeline(ProcessABC):
process_from = 0
meta.run()
- meta.add_fields(
- {"omero_id,": config["general"]["id"], "image_id": image_id}
+ meta.add_fields( # Add non-logfile metadata
+ {
+ "omero_id,": config["general"]["id"],
+ "image_id": image_id,
+ "parameters": self.parameters.to_yaml(),
+ }
)
try:
tiler = Tiler.from_image(
--
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