From 61b166b4ae8c705dadcb4e47e8067cff6eabceca Mon Sep 17 00:00:00 2001
From: Arin Wongprommoon <arin.wongprommoon@ed.ac.uk>
Date: Fri, 13 Jan 2023 16:27:41 +0000
Subject: [PATCH] refactor(aliby): tiler dummy method defining metadata dict
REFERENCES:
- issue #53
---
src/aliby/tile/tiler.py | 16 +++++++++-------
1 file changed, 9 insertions(+), 7 deletions(-)
diff --git a/src/aliby/tile/tiler.py b/src/aliby/tile/tiler.py
index f25b97c4..e8ea4a97 100644
--- a/src/aliby/tile/tiler.py
+++ b/src/aliby/tile/tiler.py
@@ -256,18 +256,20 @@ class Tiler(StepABC):
----------
parameters: dictionary output of an instance of TilerParameters
"""
+ imgdmy_obj = ImageDummy(parameters)
+ dummy_image = imgdmy_obj.get_data_lazy()
dummy_omero_metadata = {
- "size_x": 1,
- "size_y": 1,
- "size_z": 1,
- "size_c": 1,
- "size_t": 1,
- "channels": ["Brightfield"],
+ "size_x": dummy_image.shape[3],
+ "size_y": dummy_image.shape[4],
+ "size_z": dummy_image.shape[2],
+ "size_c": dummy_image.shape[1],
+ "size_t": dummy_image.shape[0],
+ "channels": [parameters["ref_channel"]],
"name": " ",
}
return cls(
- ImageDummy(parameters),
+ imgdmy_obj,
dummy_omero_metadata,
TilerParameters.from_dict(parameters),
)
--
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