diff --git a/docs/source/specifications/metadata.org b/docs/source/specifications/metadata.org index c7dc02b06c1e879b66dabfdfc8d8653575fbcc0f..52d514a3465236a9079a8bba3ee721b013808a28 100644 --- a/docs/source/specifications/metadata.org +++ b/docs/source/specifications/metadata.org @@ -4,7 +4,7 @@ Draft for recommended metadata for images to provide a standard interface for al * Essential data - DimensionOrder: str - Order of dimensions (e.g., TCZYX for Channel, Time, Z,Y,X) + Order of dimensions (e.g., TCZYX for Time, Channel, Z, Y, X) - PixelSize: float Size of pixel, useful for segmentation. - Channels: List[str] diff --git a/src/aliby/io/image.py b/src/aliby/io/image.py index 57283dc493fc226f013fb96c6e7c7d03abd05147..ca9daa64bf147784bb85b659844978a6c96b86f2 100644 --- a/src/aliby/io/image.py +++ b/src/aliby/io/image.py @@ -5,7 +5,7 @@ Image: Loads images and registers them. Image instances loads images from a specified directory into an object that also contains image properties such as name and metadata. Pixels from images are stored in dask arrays; the standard way is to store them in 5-dimensional -arrays: T(ime point), C(channel), Z(-stack), X, Y. +arrays: T(ime point), C(channel), Z(-stack), Y, X. This module consists of a base Image class (BaseLocalImage). ImageLocalOME handles local OMERO images. ImageDir handles cases in which images are split