From 77610e8c7abdd68e50f0b3f7fbd3245cdbb3e171 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Sun, 3 Jul 2022 18:16:50 +0100
Subject: [PATCH] fix/docs(signal): fix skip_pick and add quickdocs
---
io/signal.py | 13 +++++++++----
1 file changed, 9 insertions(+), 4 deletions(-)
diff --git a/io/signal.py b/io/signal.py
index 395560c5..fee4e5ca 100644
--- a/io/signal.py
+++ b/io/signal.py
@@ -83,7 +83,7 @@ class Signal(BridgeH5):
elif isinstance(df, list):
return [self.get_retained(d) for d in df]
- def apply_prepost(self, dataset: str):
+ def apply_prepost(self, dataset: str, skip_pick: bool = None):
"""
Apply modifier operations (picker, merger) to a given dataframe.
"""
@@ -117,7 +117,7 @@ class Signal(BridgeH5):
(merged, df.loc[nonmergeable_ids]), names=df.index.names
)
- if "modifiers/picks" in f:
+ if "modifiers/picks" in f and not skip_pick:
picks = self.get_picks(names=merged.index.names)
# missing_cells = [i for i in picks if tuple(i) not in
# set(merged.index)]
@@ -155,10 +155,12 @@ class Signal(BridgeH5):
@property
def p_siglist(self):
+ """Print signal list"""
self.datasets
@property
def siglist(self):
+ """Return list of signals"""
try:
if not hasattr(self, "_siglist"):
self._siglist = []
@@ -270,7 +272,7 @@ class Signal(BridgeH5):
columns=f[path + "/timepoint"][()],
)
- def get_siglist(self, name, node):
+ def get_siglist(self, name: str, node):
fullname = node.name
if isinstance(node, h5py.Group) and np.all(
[isinstance(x, h5py.Dataset) for x in node.values()]
@@ -297,7 +299,10 @@ class Signal(BridgeH5):
return obj[()]
@staticmethod
- def join_tracks_pair(target, source):
+ def join_tracks_pair(target: pd.Series, source: pd.Series):
+ """
+ Join two tracks
+ """
tgt_copy = copy(target)
end = find_1st(target.values[::-1], 0, cmp_larger)
tgt_copy.iloc[-end:] = source.iloc[-end:].values
--
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