diff --git a/src/agora/abc.py b/src/agora/abc.py
index c396b4b1503c7558dc51eaf9032b7cb14485bc38..916fd11c17b2d4d169ba50184ee1721191764919 100644
--- a/src/agora/abc.py
+++ b/src/agora/abc.py
@@ -249,5 +249,5 @@ class StepABC(ProcessABC):
         return self._run_tp(tp, **kwargs)
 
     def run(self):
-        # Replace run withn run_tp
+        # Replace run with run_tp
         raise Warning("Steps use run_tp instead of run")
diff --git a/src/agora/io/writer.py b/src/agora/io/writer.py
index a13828c795fe406423531ba9b11a3c2cac224881..ee337a09e950e8b90eaefa16b8be2ca317a91ed3 100644
--- a/src/agora/io/writer.py
+++ b/src/agora/io/writer.py
@@ -172,7 +172,6 @@ class DynamicWriter:
                             # append or create new dataset
                             self._append(value, key, hgroup)
                     except Exception as e:
-                        print(key, value)
                         self._log(
                             f"{key}:{value} could not be written: {e}", "error"
                         )
diff --git a/src/extraction/core/extractor.py b/src/extraction/core/extractor.py
index e254532faadf893a4d41254da6c925da9518bde2..8a29766f540423f022c99638459f79a9231f0058 100644
--- a/src/extraction/core/extractor.py
+++ b/src/extraction/core/extractor.py
@@ -407,8 +407,6 @@ class Extractor(StepABC):
         reduced = img
         if method is not None:
             reduced = reduce_z(img, method)
-        if reduced.shape[0] < 10:
-            print("ahoy")
         return reduced
 
     def extract_tp(
@@ -484,12 +482,6 @@ class Extractor(StepABC):
         # generate boolean masks for background as a list with one mask per trap
         bgs = np.array([])
         if self.params.sub_bg:
-            # bgs = [
-            #     ~np.sum(m, axis=0).astype(bool)
-            #     if np.any(m)
-            #     else np.zeros((tile_size, tile_size)).astype(bool)
-            #     for m in masks
-            # ]
             bgs = ~np.array(
                 list(
                     map(
diff --git a/src/extraction/core/functions/custom/localisation.py b/src/extraction/core/functions/custom/localisation.py
index 85dd995d7793ba6821e92820d735963f965ac910..07c22587e0bb47d7d1c32a5b8c768278f53517b9 100644
--- a/src/extraction/core/functions/custom/localisation.py
+++ b/src/extraction/core/functions/custom/localisation.py
@@ -129,7 +129,6 @@ def nuc_est_conv(
 
 
 def nuc_conv_3d(cell_mask, trap_image, pixel_size=0.23, spacing=0.6):
-    print(cell_mask.shape, trap_image.shape)
     cell_mask = np.stack([cell_mask] * trap_image.shape[0])
     ratio = spacing / pixel_size
     cell_fluo = trap_image[cell_mask]