From 819c3bfc5ada8086f22a9f95f4e2492d317dd178 Mon Sep 17 00:00:00 2001
From: Peter Swain <peter.swain@ed.ac.uk>
Date: Mon, 19 Feb 2024 13:20:19 +0000
Subject: [PATCH] change(pipeline): changed logging stream_level
To ensure INFO logs are printed to the screen.
---
src/aliby/pipeline.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/src/aliby/pipeline.py b/src/aliby/pipeline.py
index 0148492..eb7932b 100644
--- a/src/aliby/pipeline.py
+++ b/src/aliby/pipeline.py
@@ -183,13 +183,13 @@ class Pipeline(ProcessABC):
@staticmethod
def setLogger(
- folder, file_level: str = "INFO", stream_level: str = "WARNING"
+ folder, file_level: str = "INFO", stream_level: str = "INFO"
):
"""Initialise and format logger."""
logger = logging.getLogger("aliby")
logger.setLevel(getattr(logging, file_level))
formatter = logging.Formatter(
- "%(asctime)s - %(levelname)s:%(message)s",
+ "%(asctime)s - %(levelname)s: %(message)s",
datefmt="%Y-%m-%dT%H:%M:%S%z",
)
# for streams - stdout, files, etc.
@@ -207,7 +207,7 @@ class Pipeline(ProcessABC):
"""Get meta data and identify each position."""
config = self.parameters.to_dict()
# print configuration
- print("\nalibylite\n")
+ logging.getLogger("aliby").info(f"Using alibylite.")
try:
logging.getLogger("aliby").info(f"Using Baby {baby.__version__}.")
except AttributeError:
--
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