diff --git a/src/agora/io/cells.py b/src/agora/io/cells.py index 13c540a7d5945535eb8c72bf50408944d2142edb..5656dcbf46bd95c90fc1b1b63c067aa64674e89b 100644 --- a/src/agora/io/cells.py +++ b/src/agora/io/cells.py @@ -16,6 +16,9 @@ class Cells: """ Extract information from an h5 file. + Use output from BABY to find cells detected, get, and fill, edge masks + and retrieve mother-bud relationships. + This class accesses in the h5 file: 'cell_info', which contains 'angles', 'cell_label', 'centres', @@ -25,11 +28,11 @@ class Cells: 'trap_info', which contains 'drifts', and 'trap_locations'. - The "timepoint", "cell_label", and "trap" variables are consistent 1D lists. + The "timepoint", "cell_label", and "trap" variables are mutually consistent + 1D lists. Examples are self["timepoint"][self.get_idx(1, 3)] to find the time points where cell 1 was present in trap 3. - """ def __init__(self, filename, path="cell_info"):