From 8b6f7b0385340c6cc0588df60f0edd3ddf4aa1cb Mon Sep 17 00:00:00 2001
From: alan <alan@Arran.bio.ed.ac.uk>
Date: Tue, 6 Sep 2022 17:59:39 +0100
Subject: [PATCH] refactor(tests): get_traps->get_tiles
---
extraction/examples/tiler_error.py | 2 +-
tests/aliby/test_baby_client.py | 2 +-
tests/aliby/test_tiler.py | 2 +-
3 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/extraction/examples/tiler_error.py b/extraction/examples/tiler_error.py
index 89973296..78619c8f 100644
--- a/extraction/examples/tiler_error.py
+++ b/extraction/examples/tiler_error.py
@@ -27,7 +27,7 @@ plt.show()
tiler = Tiler(expt, template=trap_template)
# Load images (takes about 5 mins)
-trap_tps = tiler.get_traps_timepoint(0, tile_size=117, z=[2])
+trap_tps = tiler.get_tiles_timepoint(0, tile_size=117, z=[2])
# Plot found traps
nrows, ncols = (5, 5)
diff --git a/tests/aliby/test_baby_client.py b/tests/aliby/test_baby_client.py
index 3cc42c94..a8d131a0 100644
--- a/tests/aliby/test_baby_client.py
+++ b/tests/aliby/test_baby_client.py
@@ -42,7 +42,7 @@ def test_client():
num_timepoints = 5
traps_tps = [
- seg_expt.get_traps_timepoint(
+ seg_expt.get_tiles_timepoint(
tp, tile_size=81, channels=[0], z=[0, 1, 2, 3, 4]
).squeeze()
for tp in range(num_timepoints)
diff --git a/tests/aliby/test_tiler.py b/tests/aliby/test_tiler.py
index c046d5dd..e4e04730 100644
--- a/tests/aliby/test_tiler.py
+++ b/tests/aliby/test_tiler.py
@@ -43,7 +43,7 @@ def trap_timelapse(tiler, trap_idx, channel, z):
def timepoint_traps(tiler, tp_idx, channel, z, tile_size):
channel_id = tiler.get_channel_index(channel)
- traps = tiler.get_traps_timepoint(
+ traps = tiler.get_tiles_timepoint(
tp_idx, tile_size=tile_size, channels=[channel_id], z=list(range(z))
)
return traps
--
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