From 8f19f197830c2036bf7c2f5ee8bd8ef27a906db7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Wed, 3 Aug 2022 11:30:53 +0100
Subject: [PATCH] clean(pipeline): remove unused fn
---
aliby/pipeline.py | 20 --------------------
1 file changed, 20 deletions(-)
diff --git a/aliby/pipeline.py b/aliby/pipeline.py
index 4e4e3d35..8ff616e0 100644
--- a/aliby/pipeline.py
+++ b/aliby/pipeline.py
@@ -690,26 +690,6 @@ class Pipeline(ProcessABC):
)
-def groupby_traps(traps, labels, edgemasks, ntraps):
- # Group data by traps to pass onto extractor without re-reading hdf5
- iterators = [
- groupby(zip(traps, dset), lambda x: x[0])
- for dset in (labels, edgemasks)
- ]
- label_d = {key: [x[1] for x in group] for key, group in iterators[0]}
- mask_d = {
- key: np.dstack(
- [ndimage.morphology.binary_fill_holes(x[1]) for x in group]
- )
- for key, group in iterators[1]
- }
-
- labels = {i: label_d.get(i, []) for i in range(ntraps)}
- masks = {i: mask_d.get(i, []) for i in range(ntraps)}
-
- return labels, masks
-
-
def _close_session(session):
if session:
session.close()
--
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