From 8fa48974fff195b4d7ca20adaae0514e716ff3f0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Sat, 24 Sep 2022 14:39:28 +0100
Subject: [PATCH] pyproject(toml): rm dups
---
pyproject.toml | 35 +++++++++++++++++------------------
1 file changed, 17 insertions(+), 18 deletions(-)
diff --git a/pyproject.toml b/pyproject.toml
index 165ace10..239b193d 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -13,43 +13,52 @@ packages = [
readme = "README.md"
[tool.poetry.dependencies]
+python = ">=3.8, <3.11"
PyYAML = "^6.0"
flatten-dict = "^0.4.2"
gaussianprocessderivatives = "^0.1.5"
h5py = "2.10" # File I/O
numpy = ">=1.21.6"
opencv-python = "4.1.2.30"
+p-tqdm = "^1.3.3"
pandas = ">=1.3.3"
py-find-1st = "^1.1.5" # Fast indexing
-python = ">=3.8, <3.11"
+scikit-learn = ">=1.0.2" # Used for an extraction metric
scipy = ">=1.7.3"
# [tool.poetry.group.pipeline.dependencies]
aliby-baby = "^0.1.14"
dask = "^2021.12.0"
imageio = "2.8.0" # For image-visualisation utilities
-p-tqdm = "^1.3.3" # Parallel progress bars
requests-toolbelt = "^0.9.1"
scikit-image = ">=0.18.1"
-scikit-learn = ">=1.0.2" # Used for an extraction metric
tqdm = "^4.62.3" # progress bars
xmltodict = "^0.13.0" # read ome-tiff metadata
# [tool.poetry.group.postprocessor.dependencies]
-PyYAML = "^6.0"
leidenalg = "^0.8.8"
more-itertools = "^8.12.0"
-p-tqdm = "^1.3.3"
pathos = "^0.2.8" # Lambda-friendly multithreading
pycatch22 = "^0.4.2"
-scikit-learn = ">=0.22"
-scipy = ">=1.4.1"
-seaborn = "^0.11.2"
# [tool.poetry.group.network.dependencies]
omero-py = {version = ">=5.6.2", optional = true } # contact omero server
zeroc-ice = {version="3.6.5", optional = true} # networking interface, slow to build
+[tool.poetry.group.dev]
+optional = true
+
+[tool.poetry.group.dev.dependencies]
+black = "^22.6.0"
+mypy = "^0.930"
+numpydoc = "^1.3.1"
+isort = "^5.10.1"
+jupyter = "^1.0.0"
+flake8 = "^4.0.1"
+pyright = "^1.1.258"
+pre-commit = "^2.20.0"
+seaborn = "^0.11.2"
+
# [tool.poetry.group.gui.dependencies]
# napari = ">=0.4.16"
@@ -66,16 +75,6 @@ optional = true
pytest = "^6.2.5"
-[tool.poetry.group.dev.dependencies]
-black = "^22.6.0"
-mypy = "^0.930"
-numpydoc = "^1.3.1"
-isort = "^5.10.1"
-jupyter = "^1.0.0"
-flake8 = "^4.0.1"
-pyright = "^1.1.258"
-pre-commit = "^2.20.0"
-
[build-system]
requires = ["setuptools", "poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
--
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