From a6e5f144bf6101394f067a99f29e74c0ce219d9c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Mon, 21 Feb 2022 15:54:38 +0000
Subject: [PATCH] convert dir to str for yaml compat
---
aliby/pipeline.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/aliby/pipeline.py b/aliby/pipeline.py
index d1d594f6..f39d5d20 100644
--- a/aliby/pipeline.py
+++ b/aliby/pipeline.py
@@ -161,7 +161,7 @@ class Pipeline(ProcessABC):
conn.cache_logs(directory)
# Modify to the configuration
- self.parameters.general["directory"] = directory
+ self.parameters.general["directory"] = str(directory)
config["general"]["directory"] = directory
# Filter TODO integrate filter onto class and add regex
--
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