From aa57200d32862346cca18b3066a3944b4a36ec2e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Tue, 8 Feb 2022 12:08:10 +0000
Subject: [PATCH] update tomlock
---
poetry.lock | 94 +++++++++++++++++++++++++++++---------------------
pyproject.toml | 10 +++---
2 files changed, 60 insertions(+), 44 deletions(-)
diff --git a/poetry.lock b/poetry.lock
index ac5aac82..898f20df 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -78,7 +78,7 @@ python-versions = "*"
[[package]]
name = "aliby-agora"
-version = "0.2.15"
+version = "0.2.17"
description = "A gathering of shared utilities for the Swain Lab image processing pipeline."
category = "main"
optional = false
@@ -94,7 +94,7 @@ PyYAML = ">=6.0,<7.0"
[[package]]
name = "aliby-baby"
-version = "0.1.4"
+version = "0.1.7"
description = "Birth Annotator for Budding Yeast"
category = "main"
optional = false
@@ -107,7 +107,7 @@ numpy = ">=1.16.0,<2.0.0"
pandas = ">=1.1.4"
Pillow = ">=9.0.0,<10.0.0"
ray = {version = "1.4.0", extras = ["tune"]}
-scikit-image = ">=0.19.1,<0.20.0"
+scikit-image = ">=0.17.1,<=0.19.0"
scikit-learn = "0.22.2.post1"
tensorflow = "2.1.4"
tqdm = ">=4.62.3,<5.0.0"
@@ -116,14 +116,14 @@ xgboost = "1.4.2"
[[package]]
name = "aliby-post"
-version = "0.1.13"
+version = "0.1.15"
description = "Post-processing tools for aliby pipeline."
category = "main"
optional = false
python-versions = ">=3.7.1,<3.11"
[package.dependencies]
-aliby-agora = ">=0.2.14,<0.3.0"
+aliby-agora = ">=0.2.16,<0.3.0"
catch22 = ">=0.2.0,<0.3.0"
leidenalg = ">=0.8.8,<0.9.0"
more-itertools = ">=8.12.0,<9.0.0"
@@ -133,6 +133,7 @@ pandas = ">=1.1.4,<2.0.0"
pathos = ">=0.2.8,<0.3.0"
PyYAML = ">=6.0,<7.0"
scipy = ">=1.4.1"
+seaborn = ">=0.11.2,<0.12.0"
[[package]]
name = "appdirs"
@@ -1483,7 +1484,7 @@ pyasn1 = ">=0.1.3"
[[package]]
name = "scikit-image"
-version = "0.19.1"
+version = "0.19.0"
description = "Image processing in Python"
category = "main"
optional = false
@@ -1532,6 +1533,20 @@ python-versions = ">=3.7,<3.11"
[package.dependencies]
numpy = ">=1.16.5,<1.23.0"
+[[package]]
+name = "seaborn"
+version = "0.11.2"
+description = "seaborn: statistical data visualization"
+category = "main"
+optional = false
+python-versions = ">=3.6"
+
+[package.dependencies]
+matplotlib = ">=2.2"
+numpy = ">=1.15"
+pandas = ">=0.23"
+scipy = ">=1.0"
+
[[package]]
name = "setuptools-scm"
version = "6.4.2"
@@ -1931,7 +1946,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-
[metadata]
lock-version = "1.1"
python-versions = ">=3.7.1,<3.11"
-content-hash = "7774509cdf681d86462b6c56d58da04a4598a146648283d2e98b6590e91e3bf8"
+content-hash = "ec83f8cb42283f1254c691e03afb66551558746ac9e82d90a6969d56486d8d2f"
[metadata.files]
absl-py = [
@@ -2029,16 +2044,16 @@ alabaster = [
{file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"},
]
aliby-agora = [
- {file = "aliby-agora-0.2.15.tar.gz", hash = "sha256:2799b03aceaee9d2040693df56a6732edbf4d169224c27fdfdf2015b0bf8391f"},
- {file = "aliby_agora-0.2.15-py3-none-any.whl", hash = "sha256:2ad45eb8d64ec740ebf8c526ccf2ef40bd8386526c2e7efd3fa5d300a742dbf4"},
+ {file = "aliby-agora-0.2.17.tar.gz", hash = "sha256:edef5f0d0bae9ef8ae77759d1d5198b0d4340a9e504dfc11ea85014f339874dd"},
+ {file = "aliby_agora-0.2.17-py3-none-any.whl", hash = "sha256:2629d73e4380ae735a8ea7889103dcbf4be8e0fea651255f33c0b0e6b98cd83a"},
]
aliby-baby = [
- {file = "aliby-baby-0.1.4.tar.gz", hash = "sha256:c8393a698850e559466e7cbc5d9887b003ee498af1401b9fc055e5e1781ae9f9"},
- {file = "aliby_baby-0.1.4-py3-none-any.whl", hash = "sha256:74035d05c3b2fe6652ec52b494c9f88c6587fd64102b224aaa88d91aa66872c0"},
+ {file = "aliby-baby-0.1.7.tar.gz", hash = "sha256:eb9a572be4d86b7f3dd1cbc80e48a7f06288edcdbfb1e9028c4f1aaa56b4e621"},
+ {file = "aliby_baby-0.1.7-py3-none-any.whl", hash = "sha256:46d76eb3e08b7b47c566aded86882803b8fb426b16340b9da1ff32745e1465dd"},
]
aliby-post = [
- {file = "aliby-post-0.1.13.tar.gz", hash = "sha256:49366e6b9f451d5324bdd1ee23edaa2279cf27540725b62ca5d778cf72b0c326"},
- {file = "aliby_post-0.1.13-py3-none-any.whl", hash = "sha256:af8e95ea7eb8c47933cc8bf246731a4255ee4914ff551dcffc05d73ed3e7a56d"},
+ {file = "aliby-post-0.1.15.tar.gz", hash = "sha256:524cb4149961e107bce11f02936e9cc6dd5aafc6a92c7deaf828fd2695546121"},
+ {file = "aliby_post-0.1.15-py3-none-any.whl", hash = "sha256:c26bae99d7cac6ea0cf56c5a95c5cfa624013824c016d48a8f41f91f865d4e06"},
]
appdirs = [
{file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
@@ -3267,32 +3282,29 @@ rsa = [
{file = "rsa-4.8.tar.gz", hash = "sha256:5c6bd9dc7a543b7fe4304a631f8a8a3b674e2bbfc49c2ae96200cdbe55df6b17"},
]
scikit-image = [
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- {file = "scikit_image-0.19.1-cp310-cp310-macosx_10_13_x86_64.whl", hash = "sha256:ce144d21792560a69536c2f64ba7ecd28542a6a8ac9fd6f856465d11a4eb8648"},
- {file = "scikit_image-0.19.1-cp310-cp310-macosx_12_0_arm64.whl", hash = "sha256:42ab5a6d516fced19ae317b3fbbfeb7d63434d531cb36317ad5b555c3f34c5f3"},
- {file = "scikit_image-0.19.1-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:7ec06bee79685d17b94889bb028baea0f34ea171be200885cc9a1b808d96ebf6"},
- {file = "scikit_image-0.19.1-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8385c0f9a02698048129654feb4f136d213127fbcf1d99f28e4cdd6669984f53"},
- {file = "scikit_image-0.19.1-cp310-cp310-win_amd64.whl", hash = "sha256:64da56c7d3098b91429b3070908e5c2b6534791f3ec516d1396fbe8fa51d1170"},
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+ {file = "scikit_image-0.19.0-cp39-cp39-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:ca997b556f7b159ce4f52e404553c837615be80b5aba82eaa92cdc6e0e70d201"},
+ {file = "scikit_image-0.19.0-cp39-cp39-manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:6ffac4d2108ef5a885e344d175b6b33a7035501d510c275ee6797fbeab07fec7"},
+ {file = "scikit_image-0.19.0-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:ab6a1c60e7212a0133cb0919a5091bd68a5b6ad9f695022cc2390df6e2cb5cbd"},
+ {file = "scikit_image-0.19.0-cp39-cp39-win32.whl", hash = "sha256:65649f478a9a30f3f3f8dcc5782c164f94ef9e345b5db891b7c53cce4d4ef668"},
+ {file = "scikit_image-0.19.0-cp39-cp39-win_amd64.whl", hash = "sha256:6593840a68047615a09407fe9261321063834460eac7e9a578cc166dfbde884a"},
]
scikit-learn = [
{file = "scikit-learn-0.22.2.post1.tar.gz", hash = "sha256:57538d138ba54407d21e27c306735cbd42a6aae0df6a5a30c7a6edde46b0017d"},
@@ -3348,6 +3360,10 @@ scipy = [
{file = "scipy-1.7.3-cp39-cp39-win_amd64.whl", hash = "sha256:3f78181a153fa21c018d346f595edd648344751d7f03ab94b398be2ad083ed3e"},
{file = "scipy-1.7.3.tar.gz", hash = "sha256:ab5875facfdef77e0a47d5fd39ea178b58e60e454a4c85aa1e52fcb80db7babf"},
]
+seaborn = [
+ {file = "seaborn-0.11.2-py3-none-any.whl", hash = "sha256:85a6baa9b55f81a0623abddc4a26b334653ff4c6b18c418361de19dbba0ef283"},
+ {file = "seaborn-0.11.2.tar.gz", hash = "sha256:cf45e9286d40826864be0e3c066f98536982baf701a7caa386511792d61ff4f6"},
+]
setuptools-scm = [
{file = "setuptools_scm-6.4.2-py3-none-any.whl", hash = "sha256:acea13255093849de7ccb11af9e1fb8bde7067783450cee9ef7a93139bddf6d4"},
{file = "setuptools_scm-6.4.2.tar.gz", hash = "sha256:6833ac65c6ed9711a4d5d2266f8024cfa07c533a0e55f4c12f6eff280a5a9e30"},
diff --git a/pyproject.toml b/pyproject.toml
index d714c5ca..95742f22 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
[tool.poetry]
name = "aliby"
-version = "0.1.16"
+version = "0.1.18"
description = ""
authors = ["Alan Munoz <alan.munoz@ed.ac.uk>"]
packages = [
@@ -17,7 +17,7 @@ tqdm = "^4.62.3"
scikit-learn = "0.22.2.post1"
# more-itertools = "^8.12.0"
py-find-1st = "^1.1.5"
-scikit-image = "^0.19.1"
+scikit-image = ">=0.18.1"
opencv-python = "*"
requests-toolbelt = "^0.9.1"
h5py = "2.10"
@@ -25,9 +25,9 @@ h5py = "2.10"
imageio = "2.8.0"
omero-py = ">=5.6.2"
zeroc-ice = "3.6.5"
-aliby-agora = "^0.2.14"
-aliby-baby = "^0.1.4"
-aliby-post = "^0.1.13"
+aliby-agora = "^0.2.17"
+aliby-baby = "^0.1.7"
+aliby-post = "^0.1.15"
[tool.poetry.dev-dependencies]
--
GitLab