From ac81b5fab548633ad34ec40d565c18ecf8546344 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Wed, 7 Sep 2022 11:11:33 +0100
Subject: [PATCH] fix(extractor): arguments are correctly loaded
---
extraction/core/extractor.py | 7 +++----
1 file changed, 3 insertions(+), 4 deletions(-)
diff --git a/extraction/core/extractor.py b/extraction/core/extractor.py
index 1a417168..db9ee726 100644
--- a/extraction/core/extractor.py
+++ b/extraction/core/extractor.py
@@ -652,10 +652,9 @@ class Extractor(ProcessABC):
self.writer.write(dset_path, series)
self.writer.id_cache.clear()
- def get_meta(self, flds):
- # Alan: unsure what this is doing. seems to break for "nuc_conv_3d"
- # make flds a list
- if not hasattr(flds, "__iter__"):
+ def get_meta(self, flds: t.Union[str, t.Collection]):
+ # Obtain metadata for one or multiple fields
+ if isinstance(flds, str):
flds = [flds]
meta_short = {k.split("/")[-1]: v for k, v in self.meta.items()}
return {
--
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