diff --git a/src/aliby/tile/tiler.py b/src/aliby/tile/tiler.py index 34aa89d1c2af76976f134a0fd38d58919cedc9bb..aaaa5474a363897bae283bbde067c3ebdff64050 100644 --- a/src/aliby/tile/tiler.py +++ b/src/aliby/tile/tiler.py @@ -232,8 +232,9 @@ class Tiler(StepABC): self.image = image self._metadata = metadata self.channels = metadata.get( - "channels", list(range(metadata["size_c"])) + "channels", list(range(metadata.get("size_c", 0))) ) + self.ref_channel = self.get_channel_index(parameters.ref_channel) self.trap_locs = trap_locs @@ -352,7 +353,10 @@ class Tiler(StepABC): ------- full: an array of images """ - full = self.image[t, c].compute(scheduler="synchronous") + full = self.image[t, c] + if hasattr(full, "compute"): # If using dask fetch images here + full = full.compute(scheduler="synchronous") + return full @property