From bc098e12db1156b4a56bff50bbb3b2db4ff9e8ba Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Thu, 16 Jun 2022 13:21:26 +0100
Subject: [PATCH] add rudimentary reconnection attempt to tiler
---
aliby/tile/tiler.py | 22 ++++++++++++++++------
1 file changed, 16 insertions(+), 6 deletions(-)
diff --git a/aliby/tile/tiler.py b/aliby/tile/tiler.py
index 0ad6bc33..e7d159a2 100644
--- a/aliby/tile/tiler.py
+++ b/aliby/tile/tiler.py
@@ -229,14 +229,24 @@ class Tiler(ProcessABC):
def get_tc(self, t, c):
# Get image by forcing loading it into cache. Assumes TCZYX dimensional order.
# WORKAROUND around error (which arose on 2022/06/14) when fetching 3-D data.
- full = np.stack(
- [
+ n_attempts = 0
+ while n_attempts < 5:
+
+ try:
+ full = np.stack(
+ [
self.image[t, c, z].compute()
for z in range(self.image.shape[2])
- ],
- axis=0,
- )
- # full = self.image[t, c].compute()
+ ],
+ axis=0,
+ )
+ # full = self.image[t, c].compute()
+ n_attempts=5
+ except:
+ print("Warning: Error ocurred when fetching images. Attempt {}".format(n_attempts+1))
+ self.image.conn.connect()
+ n_attempts += 1
+
return full
--
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