diff --git a/src/aliby/pipeline.py b/src/aliby/pipeline.py index e81e982e849813158a34090a23c74d8c09da5ca9..10917b64a3b8a3f1118366ef3600a5251d44546c 100644 --- a/src/aliby/pipeline.py +++ b/src/aliby/pipeline.py @@ -36,6 +36,18 @@ from postprocessor.core.processor import PostProcessor, PostProcessorParameters class PipelineParameters(ParametersABC): + """ + Parameters that host what is run and how. It takes a list of dictionaries, one for + general in collection: + pass dictionary for each step + -------------------- + expt_id: int or str Experiment id (if integer) or local path (if string). + directory: str Directory into which results are dumped. Default is "../data" + + Provides default parameters for the entire pipeline. This downloads the logfiles and sets the default + timepoints and extraction parameters from there. + """ + _pool_index = None def __init__( @@ -58,14 +70,6 @@ class PipelineParameters(ParametersABC): postprocessing={}, # reporting={}, ): - """ - Load unit test experiment - :expt_id: Experiment id - :directory: Output directory - - Provides default parameters for the entire pipeline. This downloads the logfiles and sets the default - timepoints and extraction parameters from there. - """ expt_id = general.get("expt_id", 19993) if isinstance(expt_id, PosixPath): expt_id = str(expt_id)