From bd61641b9080559fc45a328b2e7b95ac9a616cb6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Thu, 5 Jan 2023 23:29:12 +0000
Subject: [PATCH] feat(image): add name, dimorder to ImageDir
---
src/aliby/io/image.py | 16 ++++++++++++++--
1 file changed, 14 insertions(+), 2 deletions(-)
diff --git a/src/aliby/io/image.py b/src/aliby/io/image.py
index fca64f5d..816c9e13 100644
--- a/src/aliby/io/image.py
+++ b/src/aliby/io/image.py
@@ -224,16 +224,28 @@ class ImageDir(BaseLocalImage):
# If extra channels, pick the first stack of the last dimensions
- pixels = img
while len(img.shape) > 3:
img = img[..., 0]
+
if self._meta:
self._meta["size_x"], self._meta["size_y"] = img.shape[-2:]
- img = da.reshape(img, (*self._dim_values(), *img.shape[1:]))
+ # img = da.reshape(img, (*self._meta, *img.shape[1:]))
+ img = da.reshape(img, self._meta.values())
pixels = self.format_data(img)
return pixels
+ @property
+ def name(self):
+ return self.path.stem
+
+ @property
+ def dimorder(self):
+ # Assumes only dimensions start with "size"
+ return [
+ k.split("_")[-1] for k in self._meta.keys() if k.startswith("size")
+ ]
+
class Image(BridgeOmero):
"""
--
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