From c64cd60c226ca60e57b556e3fb2fa4d80f4fa0de Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Thu, 24 Feb 2022 12:30:52 +0000
Subject: [PATCH] remove old-format mother_assign
---
aliby/baby_client.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/aliby/baby_client.py b/aliby/baby_client.py
index b889d4fc..df62b8a5 100644
--- a/aliby/baby_client.py
+++ b/aliby/baby_client.py
@@ -59,13 +59,13 @@ def format_segmentation(segmentation, tp):
# merged["mother_assign_dynamic"] = [merged["mother_assign"]]
if "mother_assign" in merged:
del merged["mother_assign"]
- mother_assign = [x["mother_assign"] for x in segmentation]
+ # mother_assign = [x["mother_assign"] for x in segmentation]
# Check that the lists are all of the same length (in case of errors in
# BABY)
n_cells = min([len(v) for v in merged.values()])
merged = {k: v[:n_cells] for k, v in merged.items()}
merged["timepoint"] = [tp] * n_cells
- merged["mother_assign"] = mother_assign
+ # merged["mother_assign"] = mother_assign
return merged
--
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