diff --git a/aliby/pipeline.py b/aliby/pipeline.py index dc43eb6fbcca570b0f68f7e65c4ca5a5b6ce14f3..fa46f25d75173a488f68afcb38fdba49aaa97e17 100644 --- a/aliby/pipeline.py +++ b/aliby/pipeline.py @@ -337,7 +337,7 @@ class Pipeline(ProcessABC): return results - def create_pipeline(self, image_id, index=None): + def create_pipeline(self, image_id): config = self.parameters.to_dict() pparams = config name, image_id = image_id @@ -563,7 +563,7 @@ class Pipeline(ProcessABC): # Step-specific actions - if step=='tiler': + if step == "tiler": if i == min_process_from: print( f"Found {steps['tiler'].n_traps} traps in {image.name}" @@ -593,7 +593,6 @@ class Pipeline(ProcessABC): for k in ["masks", "labels"]: run_kwargs[step][k] = None - frac_clogged_traps = self.check_earlystop( filename, earlystop, steps["tiler"].tile_size )