From c74658778aa2c9cc17a106c1c50a8b06cbc74907 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Thu, 23 Jun 2022 13:56:56 +0100
Subject: [PATCH] cleanup
---
aliby/pipeline.py | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/aliby/pipeline.py b/aliby/pipeline.py
index dc43eb6f..fa46f25d 100644
--- a/aliby/pipeline.py
+++ b/aliby/pipeline.py
@@ -337,7 +337,7 @@ class Pipeline(ProcessABC):
return results
- def create_pipeline(self, image_id, index=None):
+ def create_pipeline(self, image_id):
config = self.parameters.to_dict()
pparams = config
name, image_id = image_id
@@ -563,7 +563,7 @@ class Pipeline(ProcessABC):
# Step-specific actions
- if step=='tiler':
+ if step == "tiler":
if i == min_process_from:
print(
f"Found {steps['tiler'].n_traps} traps in {image.name}"
@@ -593,7 +593,6 @@ class Pipeline(ProcessABC):
for k in ["masks", "labels"]:
run_kwargs[step][k] = None
-
frac_clogged_traps = self.check_earlystop(
filename, earlystop, steps["tiler"].tile_size
)
--
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