diff --git a/src/postprocessor/core/multisignal/align.py b/src/postprocessor/core/multisignal/align.py index 855ceccbfb1b786d925905671c52cbc99e1faff1..241736f36598711fc5e0b15d48e306841d7ffba6 100644 --- a/src/postprocessor/core/multisignal/align.py +++ b/src/postprocessor/core/multisignal/align.py @@ -1,9 +1,10 @@ #!/usr/bin/env python3 +import bottleneck as bn import numpy as np import pandas as pd -from agora.abc import ParametersABC +from agora.abc import ParametersABC from postprocessor.core.abc import PostProcessABC @@ -97,7 +98,7 @@ class align(PostProcessABC): # i.e. if events_at_least = 1, then cells that have no birth events are # deleted. event_mask = mask_df.apply( - lambda x: np.sum(x) >= self.events_at_least, axis=1 + lambda x: bn.nansum(x) >= self.events_at_least, axis=1 ) mask_df = mask_df.iloc[event_mask.to_list()] @@ -132,7 +133,7 @@ class align(PostProcessABC): # Do not remove bits of traces before first event else: # Add columns to left, filled with NaNs - max_shift = np.max(shift_list) + max_shift = bn.nanmax(shift_list) mask_aligned = df_extend_nan(mask_aligned, max_shift) trace_aligned = df_extend_nan(trace_aligned, max_shift) # shift each