diff --git a/extraction/core/functions/cell.py b/extraction/core/functions/cell.py index 9eea1cedbe0f5979c7a779ba70a11c768e58d8a3..13430d716080b8764815f00ee286f7dc0923c418 100644 --- a/extraction/core/functions/cell.py +++ b/extraction/core/functions/cell.py @@ -55,7 +55,7 @@ def max5px_med(cell_mask, trap_image): max5px = np.mean(top_vals, dtype=float) med = sorted_vals[len(sorted_vals) // 2] if len(sorted_vals) else 1 - return max2p5px / med + return max5px / med def max2p5pc_med(cell_mask, trap_image): diff --git a/extraction/core/functions/defaults.py b/extraction/core/functions/defaults.py index 310580652b6737e1dec9549c6abcc94211fe5ce2..36a6449d89f2786ad2a23e5c1bcdb2ce253044be 100644 --- a/extraction/core/functions/defaults.py +++ b/extraction/core/functions/defaults.py @@ -31,9 +31,7 @@ def exparams_from_meta(meta: Union[dict, PosixPath, str], extras=["ph"]): "median", "imBackground", "max2p5pc", - "max2p5pc_med", "max5px", - "max5px_med", } default_rm = {r: default_metrics for r in default_reductions}