From c93ae85f7e7a2f7a5ddb2496cb3d4a62ca510517 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Tue, 18 Jan 2022 18:49:11 +0000
Subject: [PATCH] rm max_meds from defaults
---
extraction/core/functions/cell.py | 2 +-
extraction/core/functions/defaults.py | 2 --
2 files changed, 1 insertion(+), 3 deletions(-)
diff --git a/extraction/core/functions/cell.py b/extraction/core/functions/cell.py
index 9eea1ced..13430d71 100644
--- a/extraction/core/functions/cell.py
+++ b/extraction/core/functions/cell.py
@@ -55,7 +55,7 @@ def max5px_med(cell_mask, trap_image):
max5px = np.mean(top_vals, dtype=float)
med = sorted_vals[len(sorted_vals) // 2] if len(sorted_vals) else 1
- return max2p5px / med
+ return max5px / med
def max2p5pc_med(cell_mask, trap_image):
diff --git a/extraction/core/functions/defaults.py b/extraction/core/functions/defaults.py
index 31058065..36a6449d 100644
--- a/extraction/core/functions/defaults.py
+++ b/extraction/core/functions/defaults.py
@@ -31,9 +31,7 @@ def exparams_from_meta(meta: Union[dict, PosixPath, str], extras=["ph"]):
"median",
"imBackground",
"max2p5pc",
- "max2p5pc_med",
"max5px",
- "max5px_med",
}
default_rm = {r: default_metrics for r in default_reductions}
--
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