diff --git a/pcore/pipeline.py b/pcore/pipeline.py index 209c437b2dc3ab303a46e6a922fd7a964c2d8d54..e172311739d9b451c03ba80283ab29ad8ab47e27 100644 --- a/pcore/pipeline.py +++ b/pcore/pipeline.py @@ -247,7 +247,7 @@ class Pipeline(ProcessABC): # Run post processing post_proc_params = PostProcessorParameters.from_dict( - self.parameters.postprocessing.to_dict() + self.parameters.postprocessing ) PostProcessor(filename, post_proc_params).run() return True @@ -267,7 +267,7 @@ class Pipeline(ProcessABC): s = Signal(filename) df = s["/extraction/general/None/area"] frac_clogged_traps = ( - df[df.columns[i - earlystop["ntps_to_eval"] : i]] + df[df.columns[-1 - earlystop["ntps_to_eval"] : -1]] .dropna(how="all") .notna() .groupby("trap")