From d0b9b7c38bb6705e2f28d8037b45a336f171c75d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Fri, 19 Nov 2021 12:38:07 +0000
Subject: [PATCH] earlystop and postprocessing bugfix
---
pcore/pipeline.py | 4 ++--
1 file changed, 2 insertions(+), 2 deletions(-)
diff --git a/pcore/pipeline.py b/pcore/pipeline.py
index 209c437b..e1723117 100644
--- a/pcore/pipeline.py
+++ b/pcore/pipeline.py
@@ -247,7 +247,7 @@ class Pipeline(ProcessABC):
# Run post processing
post_proc_params = PostProcessorParameters.from_dict(
- self.parameters.postprocessing.to_dict()
+ self.parameters.postprocessing
)
PostProcessor(filename, post_proc_params).run()
return True
@@ -267,7 +267,7 @@ class Pipeline(ProcessABC):
s = Signal(filename)
df = s["/extraction/general/None/area"]
frac_clogged_traps = (
- df[df.columns[i - earlystop["ntps_to_eval"] : i]]
+ df[df.columns[-1 - earlystop["ntps_to_eval"] : -1]]
.dropna(how="all")
.notna()
.groupby("trap")
--
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