From d607733d019a01e59be7df6407020fc4fa814565 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Tue, 4 Oct 2022 20:18:15 +0100
Subject: [PATCH] [WIP] refactor(lineageprocess): cleanup
---
src/postprocessor/core/lineageprocess.py | 21 ---------------------
1 file changed, 21 deletions(-)
diff --git a/src/postprocessor/core/lineageprocess.py b/src/postprocessor/core/lineageprocess.py
index 296effce..34ccf234 100644
--- a/src/postprocessor/core/lineageprocess.py
+++ b/src/postprocessor/core/lineageprocess.py
@@ -26,27 +26,6 @@ class LineageProcess(PostProcessABC):
def __init__(self, parameters: LineageProcessParameters):
super().__init__(parameters)
- def filter_signal_cells(
- self, signal: pd.DataFrame, lineage: np.ndarray = None
- ):
- """
- Use casting to filter cell ids in signal and lineage
- """
- if lineage is None:
- lineage = self.lineage
-
- sig_ind = np.array(list(signal.index)).T[:, None, :]
- mo_av = (
- (lineage[:, :2].T[:, :, None] == sig_ind).all(axis=0).any(axis=1)
- )
- da_av = (
- (lineage[:, [0, 2]].T[:, :, None] == sig_ind)
- .all(axis=0)
- .any(axis=1)
- )
-
- return lineage[mo_av & da_av]
-
@abstractmethod
def run(
self,
--
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