diff --git a/aliby/pipeline.py b/aliby/pipeline.py index 73cd003e2859e486ced0434a31c9a85ff2dea3bd..b1d75dae31e11f0a2a583eb027497293e4c6c57d 100644 --- a/aliby/pipeline.py +++ b/aliby/pipeline.py @@ -145,7 +145,10 @@ class Pipeline(ProcessABC): config["general"]["directory"] = directory # Filter TODO integrate filter onto class and add regex - image_ids = {k: v for k, v in image_ids.items() if k.startswith(strain_filter)} + if isinstance(strain_filter, str): + image_ids = {k: v for k, v in image_ids.items() if k.startswith(strain_filter)} + elif isinstance(strain_filter, int): + image_ids = {k:v for i,( k,v ) in enumerate( image_ids.items() ) if i==0} if distributed != 0: # Gives the number of simultaneous processes with Pool(distributed) as p: