From dab393d6e8b109e3914e49b66df010569c1f03a0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Tue, 22 Mar 2022 17:00:19 +0000
Subject: [PATCH] rm unused imports
---
extraction/core/extractor.py | 13 +------------
1 file changed, 1 insertion(+), 12 deletions(-)
diff --git a/extraction/core/extractor.py b/extraction/core/extractor.py
index 39713f2a..966ba21e 100644
--- a/extraction/core/extractor.py
+++ b/extraction/core/extractor.py
@@ -1,19 +1,10 @@
-import os
-from pathlib import Path, PosixPath
-
-from collections.abc import Iterable
import logging
from time import perf_counter
-# from copy import copy
from typing import Union, List, Dict, Callable
-from datetime import datetime
import numpy as np
import pandas as pd
-from scipy.sparse import dok_matrix, vstack, issparse
-from tqdm import tqdm
-
from extraction.core.functions.loaders import (
load_funs,
@@ -30,15 +21,13 @@ from agora.io.writer import Writer, load_attributes
from agora.io.cells import CellsLinear
from aliby.tile.tiler import Tiler
-import matplotlib.pyplot as plt
-
CELL_FUNS, TRAPFUNS, FUNS = load_funs()
CUSTOM_FUNS, CUSTOM_ARGS = load_custom_args()
RED_FUNS = load_redfuns()
MERGE_FUNS = load_mergefuns()
# Assign datatype depending on the metric used
-m2type = {"mean": np.float32, "median": np.ubyte, "imBackground": np.ubyte}
+# m2type = {"mean": np.float32, "median": np.ubyte, "imBackground": np.ubyte}
class ExtractorParameters(ParametersABC):
--
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