From dbc6ba31813abb7de444c340da776eca4e3cbb82 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Tue, 25 Jan 2022 11:56:39 +0000
Subject: [PATCH] lock and bump

---
 poetry.lock    | 587 ++++++++++++++++++++++++-------------------------
 pyproject.toml |   4 +-
 2 files changed, 288 insertions(+), 303 deletions(-)

diff --git a/poetry.lock b/poetry.lock
index 62c7c092..5ace4714 100644
--- a/poetry.lock
+++ b/poetry.lock
@@ -78,7 +78,7 @@ python-versions = "*"
 
 [[package]]
 name = "aliby-agora"
-version = "0.2.8"
+version = "0.2.10"
 description = "A gathering of shared utilities for the Swain Lab image processing pipeline."
 category = "main"
 optional = false
@@ -86,6 +86,7 @@ python-versions = ">=3.7.1,<3.11"
 
 [package.dependencies]
 h5py = "2.10"
+opencv-python = ">=4.5.5,<5.0.0"
 pandas = ">=1.3.5,<2.0.0"
 py-find-1st = ">=1.1.5,<2.0.0"
 PyYAML = ">=6.0,<7.0"
@@ -113,14 +114,14 @@ xgboost = "1.4.2"
 
 [[package]]
 name = "aliby-post"
-version = "0.1.5"
+version = "0.1.7"
 description = "Post-processing tools for aliby pipeline."
 category = "main"
 optional = false
 python-versions = ">=3.7.1,<3.11"
 
 [package.dependencies]
-aliby-agora = ">=0.2.8,<0.3.0"
+aliby-agora = ">=0.2.10,<0.3.0"
 catch22 = ">=0.2.0,<0.3.0"
 leidenalg = ">=0.8.8,<0.9.0"
 more-itertools = ">=8.12.0,<9.0.0"
@@ -390,14 +391,14 @@ testing = ["covdefaults (>=1.2.0)", "coverage (>=4)", "pytest (>=4)", "pytest-co
 
 [[package]]
 name = "fonttools"
-version = "4.28.5"
+version = "4.29.0"
 description = "Tools to manipulate font files"
 category = "main"
 optional = false
 python-versions = ">=3.7"
 
 [package.extras]
-all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=13.0.0)", "xattr"]
+all = ["fs (>=2.2.0,<3)", "lxml (>=4.0,<5)", "zopfli (>=0.1.4)", "lz4 (>=1.7.4.2)", "matplotlib", "sympy", "skia-pathops (>=0.5.0)", "brotlicffi (>=0.8.0)", "scipy", "brotli (>=1.0.1)", "munkres", "unicodedata2 (>=14.0.0)", "xattr"]
 graphite = ["lz4 (>=1.7.4.2)"]
 interpolatable = ["scipy", "munkres"]
 lxml = ["lxml (>=4.0,<5)"]
@@ -406,20 +407,20 @@ plot = ["matplotlib"]
 symfont = ["sympy"]
 type1 = ["xattr"]
 ufo = ["fs (>=2.2.0,<3)"]
-unicode = ["unicodedata2 (>=13.0.0)"]
+unicode = ["unicodedata2 (>=14.0.0)"]
 woff = ["zopfli (>=0.1.4)", "brotlicffi (>=0.8.0)", "brotli (>=1.0.1)"]
 
 [[package]]
 name = "frozenlist"
-version = "1.2.0"
+version = "1.3.0"
 description = "A list-like structure which implements collections.abc.MutableSequence"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "fsspec"
-version = "2021.11.1"
+version = "2022.1.0"
 description = "File-system specification"
 category = "main"
 optional = false
@@ -465,7 +466,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "google-api-core"
-version = "2.3.2"
+version = "2.4.0"
 description = "Google API client core library"
 category = "main"
 optional = false
@@ -594,7 +595,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "igraph"
-version = "0.9.8"
+version = "0.9.9"
 description = "High performance graph data structures and algorithms"
 category = "main"
 optional = false
@@ -606,7 +607,7 @@ texttable = ">=1.6.2"
 [package.extras]
 doc = ["Sphinx (>=4.2.0)", "sphinxbootstrap4theme (>=0.6.0)"]
 plotting = ["cairocffi (>=1.2.0)"]
-test = ["networkx (>=2.5)", "pytest (>=6.2.5)", "numpy (>=1.19.0)", "pandas (>=1.1.0,<1.3.1)", "scipy (>=1.5.0)"]
+test = ["networkx (>=2.5)", "pytest (>=6.2.5)", "numpy (>=1.19.0)", "pandas (>=1.1.0)", "scipy (>=1.5.0)"]
 
 [[package]]
 name = "imageio"
@@ -637,7 +638,7 @@ python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*"
 
 [[package]]
 name = "importlib-metadata"
-version = "4.10.0"
+version = "4.10.1"
 description = "Read metadata from Python packages"
 category = "main"
 optional = false
@@ -699,7 +700,7 @@ python-versions = ">=3.6"
 
 [[package]]
 name = "jsonschema"
-version = "4.3.3"
+version = "4.4.0"
 description = "An implementation of JSON Schema validation for Python"
 category = "main"
 optional = false
@@ -834,11 +835,11 @@ python-versions = "*"
 
 [[package]]
 name = "multidict"
-version = "5.2.0"
+version = "6.0.2"
 description = "multidict implementation"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "multiprocess"
@@ -1151,7 +1152,7 @@ twisted = ["twisted"]
 
 [[package]]
 name = "protobuf"
-version = "3.19.1"
+version = "3.19.3"
 description = "Protocol Buffers"
 category = "main"
 optional = false
@@ -1239,7 +1240,7 @@ python-versions = ">=3.5"
 
 [[package]]
 name = "pyparsing"
-version = "3.0.6"
+version = "3.0.7"
 description = "Python parsing module"
 category = "main"
 optional = false
@@ -1250,11 +1251,11 @@ diagrams = ["jinja2", "railroad-diagrams"]
 
 [[package]]
 name = "pyrsistent"
-version = "0.18.0"
+version = "0.18.1"
 description = "Persistent/Functional/Immutable data structures"
 category = "main"
 optional = false
-python-versions = ">=3.6"
+python-versions = ">=3.7"
 
 [[package]]
 name = "pytest"
@@ -1291,14 +1292,14 @@ six = ">=1.5"
 
 [[package]]
 name = "python-igraph"
-version = "0.9.8"
+version = "0.9.9"
 description = "High performance graph data structures and algorithms (legacy package)"
 category = "main"
 optional = false
 python-versions = ">=3.6"
 
 [package.dependencies]
-igraph = "0.9.8"
+igraph = "0.9.9"
 
 [package.extras]
 cairo = ["cairocffi (>=1.2.0)"]
@@ -1384,7 +1385,7 @@ tune = ["pandas", "tabulate", "tensorboardx"]
 
 [[package]]
 name = "redis"
-version = "4.1.0"
+version = "4.1.1"
 description = "Python client for Redis database and key-value store"
 category = "main"
 optional = false
@@ -1393,11 +1394,11 @@ python-versions = ">=3.6"
 [package.dependencies]
 deprecated = ">=1.2.3"
 importlib-metadata = {version = ">=1.0", markers = "python_version < \"3.8\""}
-packaging = ">=21.3"
+packaging = ">=20.4"
 
 [package.extras]
-cryptography = ["cryptography (>=36.0.1)", "requests (>=2.26.0)"]
 hiredis = ["hiredis (>=1.0.0)"]
+ocsp = ["cryptography (>=36.0.1)", "pyopenssl (==20.0.1)", "requests (>=2.26.0)"]
 
 [[package]]
 name = "requests"
@@ -1507,7 +1508,7 @@ numpy = ">=1.16.5,<1.23.0"
 
 [[package]]
 name = "setuptools-scm"
-version = "6.3.2"
+version = "6.4.2"
 description = "the blessed package to manage your versions by scm tags"
 category = "main"
 optional = false
@@ -1518,7 +1519,8 @@ packaging = ">=20.0"
 tomli = ">=1.0.0"
 
 [package.extras]
-toml = ["setuptools (>=42)", "tomli (>=1.0.0)"]
+test = ["pytest (>=6.2)", "virtualenv (>20)"]
+toml = ["setuptools (>=42)"]
 
 [[package]]
 name = "six"
@@ -1538,7 +1540,7 @@ python-versions = "*"
 
 [[package]]
 name = "sphinx"
-version = "4.3.2"
+version = "4.4.0"
 description = "Python documentation generator"
 category = "dev"
 optional = false
@@ -1550,6 +1552,7 @@ babel = ">=1.3"
 colorama = {version = ">=0.3.5", markers = "sys_platform == \"win32\""}
 docutils = ">=0.14,<0.18"
 imagesize = "*"
+importlib-metadata = {version = ">=4.4", markers = "python_version < \"3.10\""}
 Jinja2 = ">=2.3"
 packaging = "*"
 Pygments = ">=2.0"
@@ -1564,7 +1567,7 @@ sphinxcontrib-serializinghtml = ">=1.1.5"
 
 [package.extras]
 docs = ["sphinxcontrib-websupport"]
-lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.920)", "docutils-stubs", "types-typed-ast", "types-pkg-resources", "types-requests"]
+lint = ["flake8 (>=3.5.0)", "isort", "mypy (>=0.931)", "docutils-stubs", "types-typed-ast", "types-requests"]
 test = ["pytest", "pytest-cov", "html5lib", "cython", "typed-ast"]
 
 [[package]]
@@ -1816,7 +1819,7 @@ scipy = "*"
 
 [[package]]
 name = "typed-ast"
-version = "1.5.1"
+version = "1.5.2"
 description = "a fork of Python 2 and 3 ast modules with type comment support"
 category = "dev"
 optional = false
@@ -1917,7 +1920,7 @@ testing = ["pytest (>=6)", "pytest-checkdocs (>=2.4)", "pytest-flake8", "pytest-
 [metadata]
 lock-version = "1.1"
 python-versions = ">=3.7.1,<3.11"
-content-hash = "b9c999b005d53a0efb0a37f1581fe3eac5702ca8ae43fdf11fc669a7413b7a8c"
+content-hash = "08ee313e962de1a7c6574a5caef7421dc34acf70cee4885afdc77340b519933c"
 
 [metadata.files]
 absl-py = [
@@ -2015,16 +2018,16 @@ alabaster = [
     {file = "alabaster-0.7.12.tar.gz", hash = "sha256:a661d72d58e6ea8a57f7a86e37d86716863ee5e92788398526d58b26a4e4dc02"},
 ]
 aliby-agora = [
-    {file = "aliby-agora-0.2.8.tar.gz", hash = "sha256:e340e917ff62c7694e174ceb2d0c32f1c8335b501be7af0dc7145058ebd1d5a1"},
-    {file = "aliby_agora-0.2.8-py3-none-any.whl", hash = "sha256:4e02b79d76db6941c55a25f2d0936bc80039f3b63b9bfd94facc07dafd32f363"},
+    {file = "aliby-agora-0.2.10.tar.gz", hash = "sha256:6cd3850a4b657a6033794cb7e5caa15ed963bf9a95cd8aca220fe1d704f6d94f"},
+    {file = "aliby_agora-0.2.10-py3-none-any.whl", hash = "sha256:b1fe92461f79d7a54fc3fac6668ff18ec205bfedd5732dadf0fcaa9dc9f5ad4c"},
 ]
 aliby-baby = [
     {file = "aliby-baby-0.1.2.tar.gz", hash = "sha256:564a12b44fc7e4889fb70d5a82e39e7fb01f37eeb60669c684bd18677160de93"},
     {file = "aliby_baby-0.1.2-py3-none-any.whl", hash = "sha256:f8f11b82db89a74ad8cc48059370af889f246a83d4cbc45ce75d9475a15605f7"},
 ]
 aliby-post = [
-    {file = "aliby-post-0.1.5.tar.gz", hash = "sha256:f4724ff026414dc6c6c50621a303dafba42d5e85f7ee07d57db85319499027e9"},
-    {file = "aliby_post-0.1.5-py3-none-any.whl", hash = "sha256:fb2f281b481624c2cfe262d63e21199aefd397e3deedcf8df64b26932761271d"},
+    {file = "aliby-post-0.1.7.tar.gz", hash = "sha256:82b3f6a20642fa2cee98b8647d71a08b95ba23159b97d04407474f98e720ce90"},
+    {file = "aliby_post-0.1.7-py3-none-any.whl", hash = "sha256:8b187d886ae8ba6b3ac406a1ba873db79f5784861f73b14187baadaedfe132f1"},
 ]
 appdirs = [
     {file = "appdirs-1.4.4-py2.py3-none-any.whl", hash = "sha256:a841dacd6b99318a741b166adb07e19ee71a274450e68237b4650ca1055ab128"},
@@ -2119,86 +2122,73 @@ filelock = [
     {file = "filelock-3.4.2.tar.gz", hash = "sha256:38b4f4c989f9d06d44524df1b24bd19e167d851f19b50bf3e3559952dddc5b80"},
 ]
 fonttools = [
-    {file = "fonttools-4.28.5-py3-none-any.whl", hash = "sha256:edf251d5d2cc0580d5f72de4621c338d8c66c5f61abb50cf486640f73c8194d5"},
-    {file = "fonttools-4.28.5.zip", hash = "sha256:545c05d0f7903a863c2020e07b8f0a57517f2c40d940bded77076397872d14ca"},
+    {file = "fonttools-4.29.0-py3-none-any.whl", hash = "sha256:ed9496e5650b977a697c50ac99c8e8331f9eae3f99e5ae649623359103306dfe"},
+    {file = "fonttools-4.29.0.zip", hash = "sha256:f4834250db2c9855c3385459579dbb5cdf74349ab059ea0e619359b65ae72037"},
 ]
 frozenlist = [
-    {file = "frozenlist-1.2.0-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:977a1438d0e0d96573fd679d291a1542097ea9f4918a8b6494b06610dfeefbf9"},
-    {file = "frozenlist-1.2.0-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:a8d86547a5e98d9edd47c432f7a14b0c5592624b496ae9880fb6332f34af1edc"},
-    {file = "frozenlist-1.2.0-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:181754275d5d32487431a0a29add4f897968b7157204bc1eaaf0a0ce80c5ba7d"},
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 typing-extensions = [
     {file = "typing_extensions-4.0.1-py3-none-any.whl", hash = "sha256:7f001e5ac290a0c0401508864c7ec868be4e701886d5b573a9528ed3973d9d3b"},
diff --git a/pyproject.toml b/pyproject.toml
index 2c4f2dba..840962bf 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "aliby"
-version = "0.1.10"
+version = "0.1.11"
 description = ""
 authors = ["Alan Munoz <alan.munoz@ed.ac.uk>"]
 packages = [
@@ -31,7 +31,7 @@ tensorflow = ">=1.15,<=2.3"
 aliby-agora = "^0.2.4"
 aliby-baby = "^0.1.2"
 omni-gaussian = "^0.1.1"
-aliby-post = "^0.1.5"
+aliby-post = "^0.1.7"
 
 
 [tool.poetry.dev-dependencies]
-- 
GitLab