diff --git a/extraction/core/functions/cell.py b/extraction/core/functions/cell.py index b1cba613187fc08568593d3e3bf1a4434a940b7a..01debba5b9bf0ee93703c3d32673a9150031e297 100644 --- a/extraction/core/functions/cell.py +++ b/extraction/core/functions/cell.py @@ -57,7 +57,7 @@ def max5px_med(cell_mask, trap_image): return max5px / sorted_vals[len(sorted_vals) // 2] -def max5pc_med(cell_mask, trap_image): +def max2p5pc_med(cell_mask, trap_image): npixels = cell_mask.sum() top_pixels = int(np.ceil(npixels * 0.025)) diff --git a/extraction/core/functions/defaults.py b/extraction/core/functions/defaults.py index fa4da61bf0901ef06935e79e507f988217f8b976..310580652b6737e1dec9549c6abcc94211fe5ce2 100644 --- a/extraction/core/functions/defaults.py +++ b/extraction/core/functions/defaults.py @@ -32,8 +32,8 @@ def exparams_from_meta(meta: Union[dict, PosixPath, str], extras=["ph"]): "imBackground", "max2p5pc", "max2p5pc_med", - "max2p5px", - "max2p5px_med", + "max5px", + "max5px_med", } default_rm = {r: default_metrics for r in default_reductions}