From f0b24f86b6c2d10bb2d1a038495f153d84f3150a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Tue, 18 Jan 2022 12:55:46 +0000
Subject: [PATCH] bugfix
---
extraction/core/functions/cell.py | 2 +-
extraction/core/functions/defaults.py | 4 ++--
2 files changed, 3 insertions(+), 3 deletions(-)
diff --git a/extraction/core/functions/cell.py b/extraction/core/functions/cell.py
index b1cba613..01debba5 100644
--- a/extraction/core/functions/cell.py
+++ b/extraction/core/functions/cell.py
@@ -57,7 +57,7 @@ def max5px_med(cell_mask, trap_image):
return max5px / sorted_vals[len(sorted_vals) // 2]
-def max5pc_med(cell_mask, trap_image):
+def max2p5pc_med(cell_mask, trap_image):
npixels = cell_mask.sum()
top_pixels = int(np.ceil(npixels * 0.025))
diff --git a/extraction/core/functions/defaults.py b/extraction/core/functions/defaults.py
index fa4da61b..31058065 100644
--- a/extraction/core/functions/defaults.py
+++ b/extraction/core/functions/defaults.py
@@ -32,8 +32,8 @@ def exparams_from_meta(meta: Union[dict, PosixPath, str], extras=["ph"]):
"imBackground",
"max2p5pc",
"max2p5pc_med",
- "max2p5px",
- "max2p5px_med",
+ "max5px",
+ "max5px_med",
}
default_rm = {r: default_metrics for r in default_reductions}
--
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