From f51c8b0ea02364989bb61b7bf37528b5a5a9a88d Mon Sep 17 00:00:00 2001
From: Swainlab <peter.swain@ed.ac.uk>
Date: Mon, 7 Aug 2023 12:56:06 +0100
Subject: [PATCH] removed breakpoint()
---
src/agora/io/signal.py | 1 -
src/agora/utils/merge.py | 8 --------
src/aliby/pipeline.py | 7 +------
3 files changed, 1 insertion(+), 15 deletions(-)
diff --git a/src/agora/io/signal.py b/src/agora/io/signal.py
index 0708c526..06bae6e1 100644
--- a/src/agora/io/signal.py
+++ b/src/agora/io/signal.py
@@ -191,7 +191,6 @@ class Signal(BridgeH5):
else set(merged.index)
)
# TODO : the following needs clarifying
- breakpoint()
with h5py.File(self.filename, "r") as f:
if "modifiers/picks" in f and picks:
if picks:
diff --git a/src/agora/utils/merge.py b/src/agora/utils/merge.py
index ce24d377..bc7cb4b1 100644
--- a/src/agora/utils/merge.py
+++ b/src/agora/utils/merge.py
@@ -3,19 +3,11 @@
Functions to efficiently merge rows in DataFrames.
"""
import typing as t
-from copy import copy
import numpy as np
import pandas as pd
-
from utils_find_1st import cmp_larger, find_1st
-# from agora.utils.indexing import (
-# index_isin,
-# compare_indices,
-# validate_association,
-# )
-
from agora.utils.indexing import index_isin
diff --git a/src/aliby/pipeline.py b/src/aliby/pipeline.py
index 52638883..77bcc356 100644
--- a/src/aliby/pipeline.py
+++ b/src/aliby/pipeline.py
@@ -10,7 +10,6 @@ from pathlib import Path
import h5py
import numpy as np
-import pandas as pd
from pathos.multiprocessing import Pool
from tqdm import tqdm
@@ -18,11 +17,7 @@ from agora.abc import ParametersABC, ProcessABC
from agora.io.metadata import MetaData, parse_logfiles
from agora.io.reader import StateReader
from agora.io.signal import Signal
-from agora.io.writer import (
- LinearBabyWriter,
- StateWriter,
- TilerWriter,
-)
+from agora.io.writer import LinearBabyWriter, StateWriter, TilerWriter
from aliby.baby_client import BabyParameters, BabyRunner
from aliby.haystack import initialise_tf
from aliby.io.dataset import dispatch_dataset
--
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