diff --git a/core/functions/__init__.py b/core/functions/__init__.py index e5a0d9b4834ec8f46d6e0d1256c6dcaad2e460fe..a23e56a756e58d18a78ab045575bd3e65d36b2b1 100644 --- a/core/functions/__init__.py +++ b/core/functions/__init__.py @@ -1 +1,5 @@ #!/usr/bin/env python3 + +""" +Collection of non-process functions. These are usually called by processes but not fetched automatically.. +""" diff --git a/core/functions/test_hdf.py b/core/functions/test_hdf.py deleted file mode 100644 index 5bd3b1a12e9b08743b8058d17ef4bb23719ac6a4..0000000000000000000000000000000000000000 --- a/core/functions/test_hdf.py +++ /dev/null @@ -1,19 +0,0 @@ -#!/usr/bin/env python3 -# c=CellsHDF.from_source("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5") -import h5py -from core.cells import Cells -import pandas as pd - -# f = h5py.File("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5") -fname = "/shared_libs/pipeline-core/scripts/data/20191026_ss_experiments_01/DO6MS2_003store.h5" -f = h5py.File(fname) -tracks = f["/extraction/general/None/area"][()] -cell = Cells.from_source(fname) -from postprocessor.core.processes.picker import Picker, PickerParameters - -picker = Picker(cells=cell, parameters=PickerParameters.default()) - -from postprocessor.core.processor import PostProcessor, PostProParameters - -pp = PostProcessor(filename=fname, parameters=PostProParameters.default()) -pp.run()