From f8e7ba925bc01b780048dc499cb24e79b8e5a104 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <amuoz@ed.ac.uk>
Date: Mon, 23 May 2022 10:10:12 +0100
Subject: [PATCH] cleanup and add docs
---
core/functions/__init__.py | 4 ++++
core/functions/test_hdf.py | 19 -------------------
2 files changed, 4 insertions(+), 19 deletions(-)
delete mode 100644 core/functions/test_hdf.py
diff --git a/core/functions/__init__.py b/core/functions/__init__.py
index e5a0d9b4..a23e56a7 100644
--- a/core/functions/__init__.py
+++ b/core/functions/__init__.py
@@ -1 +1,5 @@
#!/usr/bin/env python3
+
+"""
+Collection of non-process functions. These are usually called by processes but not fetched automatically..
+"""
diff --git a/core/functions/test_hdf.py b/core/functions/test_hdf.py
deleted file mode 100644
index 5bd3b1a1..00000000
--- a/core/functions/test_hdf.py
+++ /dev/null
@@ -1,19 +0,0 @@
-#!/usr/bin/env python3
-# c=CellsHDF.from_source("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5")
-import h5py
-from core.cells import Cells
-import pandas as pd
-
-# f = h5py.File("/home/alan/Documents/sync_docs/PhD/tmp/DO6MS2_003store.h5")
-fname = "/shared_libs/pipeline-core/scripts/data/20191026_ss_experiments_01/DO6MS2_003store.h5"
-f = h5py.File(fname)
-tracks = f["/extraction/general/None/area"][()]
-cell = Cells.from_source(fname)
-from postprocessor.core.processes.picker import Picker, PickerParameters
-
-picker = Picker(cells=cell, parameters=PickerParameters.default())
-
-from postprocessor.core.processor import PostProcessor, PostProParameters
-
-pp = PostProcessor(filename=fname, parameters=PostProParameters.default())
-pp.run()
--
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