diff --git a/src/aliby/tile/tiler.py b/src/aliby/tile/tiler.py index ff90624bdf3c6a987306e46634e5ade32cb691aa..c336c674767c4f45b6dc43f8dc1a25d89b60a221 100644 --- a/src/aliby/tile/tiler.py +++ b/src/aliby/tile/tiler.py @@ -231,13 +231,14 @@ class Tiler(StepABC): self.image = image self._metadata = metadata self.channels = metadata.get( - "channels", list(range(metadata.get("size_c", 0))) - ) - self.ref_channel = ( - self.get_channel_index(parameters.ref_channel) - or self.backup_ref_channel + "channels", + list(range(metadata.get("size_c", 0))), ) + self.ref_channel = self.get_channel_index(parameters.ref_channel) + if self.ref_channel is None: + self.ref_channel = self.backup_ref_channel + self.ref_channel = self.get_channel_index(parameters.ref_channel) self.tile_locs = tile_locs try: