From fafefbc36652b191ba694aa4a5f84306dc276656 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Al=C3=A1n=20Mu=C3=B1oz?= <alan.munoz@ed.ac.uk>
Date: Fri, 17 Mar 2023 10:34:25 +0000
Subject: [PATCH] fix(tiler): bak_ref_channel only used upon Nonetyp
---
src/aliby/tile/tiler.py | 11 ++++++-----
1 file changed, 6 insertions(+), 5 deletions(-)
diff --git a/src/aliby/tile/tiler.py b/src/aliby/tile/tiler.py
index ff90624b..c336c674 100644
--- a/src/aliby/tile/tiler.py
+++ b/src/aliby/tile/tiler.py
@@ -231,13 +231,14 @@ class Tiler(StepABC):
self.image = image
self._metadata = metadata
self.channels = metadata.get(
- "channels", list(range(metadata.get("size_c", 0)))
- )
- self.ref_channel = (
- self.get_channel_index(parameters.ref_channel)
- or self.backup_ref_channel
+ "channels",
+ list(range(metadata.get("size_c", 0))),
)
+ self.ref_channel = self.get_channel_index(parameters.ref_channel)
+ if self.ref_channel is None:
+ self.ref_channel = self.backup_ref_channel
+
self.ref_channel = self.get_channel_index(parameters.ref_channel)
self.tile_locs = tile_locs
try:
--
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