From fbc1d8f272edd6c79c73f47ac9c139a63c53688a Mon Sep 17 00:00:00 2001
From: pswain <peter.swain@ed.ac.uk>
Date: Tue, 19 Dec 2023 18:52:22 +0000
Subject: [PATCH] fix(indexing): fixed test_mismatch for daughters in
validate_lineage
---
src/agora/io/signal.py | 2 +-
src/agora/utils/indexing.py | 4 +---
2 files changed, 2 insertions(+), 4 deletions(-)
diff --git a/src/agora/io/signal.py b/src/agora/io/signal.py
index 52b3122..83907dc 100644
--- a/src/agora/io/signal.py
+++ b/src/agora/io/signal.py
@@ -293,7 +293,7 @@ class Signal(BridgeH5):
for dset in dataset
]
except Exception as e:
- message = f"Signal could not find data {dataset}: {e}."
+ message = f"Signal could not obtain data {dataset}: {e}."
self._log(message)
def load_merges(self):
diff --git a/src/agora/utils/indexing.py b/src/agora/utils/indexing.py
index 5e77dbb..faa8e25 100644
--- a/src/agora/utils/indexing.py
+++ b/src/agora/utils/indexing.py
@@ -95,9 +95,7 @@ def validate_lineage(
else:
test_mismatch = (
indices[flat_valid_indices, :].size
- != np.unique(
- lineage[flat_valid_lineage, c_index, :].reshape(-1, 2), axis=0
- ).size
+ != lineage[flat_valid_lineage, c_index, :].size
)
if test_mismatch:
# all unique indices in valid_lineages should be in valid_indices
--
GitLab