## Trap-wise calculations import numpy as np def imBackground(cell_masks, trap_image): ''' :param cell_masks: (numpy 3d array) cells' segmentation mask :param trap_image: the image for the trap in which the cell is (all channels) ''' if not len(cell_masks): cell_masks = np.zeros_like(trap_image) background = ~cell_masks.sum(axis=2).astype(bool) return (np.median(trap_image[np.where(background)]))