From 3f20c2de98edb2892e890ca99dfe8a9b64f53fda Mon Sep 17 00:00:00 2001
From: pswain <peter.swain@ed.ac.uk>
Date: Tue, 7 May 2024 12:52:46 +0100
Subject: [PATCH] change: new directory structure

Mimics aliby's.
---
 {wela/examples => examples}/create_tsv.py                        | 0
 {wela/examples => examples}/import_local.py                      | 0
 {wela/examples => examples}/plot_kymograph.py                    | 0
 {wela/examples => examples}/run_gr.py                            | 0
 {wela/examples => examples}/run_imageviewer.py                   | 0
 {old_data_analysis => limbo/old_data_analysis}/align.py          | 0
 {old_data_analysis => limbo/old_data_analysis}/autoreg.py        | 0
 {old_data_analysis => limbo/old_data_analysis}/crosscorr.py      | 0
 {old_data_analysis => limbo/old_data_analysis}/fft.py            | 0
 {old_data_analysis => limbo/old_data_analysis}/fft_function.py   | 0
 {old_data_analysis => limbo/old_data_analysis}/findpeaks.py      | 0
 {old_data_analysis => limbo/old_data_analysis}/standardscaler.py | 0
 {old_plotting => limbo/old_plotting}/__init__.py                 | 0
 {old_plotting => limbo/old_plotting}/boxplot.py                  | 0
 {old_plotting => limbo/old_plotting}/heatmap.py                  | 0
 {old_plotting => limbo/old_plotting}/histogram.py                | 0
 {old_plotting => limbo/old_plotting}/mean_plot.py                | 0
 {old_plotting => limbo/old_plotting}/median_plot.py              | 0
 {old_plotting => limbo/old_plotting}/plot_utils.py               | 0
 {old_plotting => limbo/old_plotting}/plottingabc.py              | 0
 {old_plotting => limbo/old_plotting}/single_birth_plot.py        | 0
 {old_plotting => limbo/old_plotting}/single_plot.py              | 0
 {wela => src/wela}/__init__.py                                   | 0
 {wela => src/wela}/add_bud_fluorescence.py                       | 0
 {wela => src/wela}/autocrosscorr.py                              | 0
 {wela => src/wela}/butterfilter.py                               | 0
 {wela => src/wela}/correct_buds.py                               | 0
 {wela => src/wela}/dataloader.py                                 | 0
 {wela => src/wela}/figs2pdf.py                                   | 0
 {wela => src/wela}/growth_rate.py                                | 0
 {wela => src/wela}/imageviewer.py                                | 0
 {wela => src/wela}/plotting.py                                   | 0
 32 files changed, 0 insertions(+), 0 deletions(-)
 rename {wela/examples => examples}/create_tsv.py (100%)
 rename {wela/examples => examples}/import_local.py (100%)
 rename {wela/examples => examples}/plot_kymograph.py (100%)
 rename {wela/examples => examples}/run_gr.py (100%)
 rename {wela/examples => examples}/run_imageviewer.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/align.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/autoreg.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/crosscorr.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/fft.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/fft_function.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/findpeaks.py (100%)
 rename {old_data_analysis => limbo/old_data_analysis}/standardscaler.py (100%)
 rename {old_plotting => limbo/old_plotting}/__init__.py (100%)
 rename {old_plotting => limbo/old_plotting}/boxplot.py (100%)
 rename {old_plotting => limbo/old_plotting}/heatmap.py (100%)
 rename {old_plotting => limbo/old_plotting}/histogram.py (100%)
 rename {old_plotting => limbo/old_plotting}/mean_plot.py (100%)
 rename {old_plotting => limbo/old_plotting}/median_plot.py (100%)
 rename {old_plotting => limbo/old_plotting}/plot_utils.py (100%)
 rename {old_plotting => limbo/old_plotting}/plottingabc.py (100%)
 rename {old_plotting => limbo/old_plotting}/single_birth_plot.py (100%)
 rename {old_plotting => limbo/old_plotting}/single_plot.py (100%)
 rename {wela => src/wela}/__init__.py (100%)
 rename {wela => src/wela}/add_bud_fluorescence.py (100%)
 rename {wela => src/wela}/autocrosscorr.py (100%)
 rename {wela => src/wela}/butterfilter.py (100%)
 rename {wela => src/wela}/correct_buds.py (100%)
 rename {wela => src/wela}/dataloader.py (100%)
 rename {wela => src/wela}/figs2pdf.py (100%)
 rename {wela => src/wela}/growth_rate.py (100%)
 rename {wela => src/wela}/imageviewer.py (100%)
 rename {wela => src/wela}/plotting.py (100%)

diff --git a/wela/examples/create_tsv.py b/examples/create_tsv.py
similarity index 100%
rename from wela/examples/create_tsv.py
rename to examples/create_tsv.py
diff --git a/wela/examples/import_local.py b/examples/import_local.py
similarity index 100%
rename from wela/examples/import_local.py
rename to examples/import_local.py
diff --git a/wela/examples/plot_kymograph.py b/examples/plot_kymograph.py
similarity index 100%
rename from wela/examples/plot_kymograph.py
rename to examples/plot_kymograph.py
diff --git a/wela/examples/run_gr.py b/examples/run_gr.py
similarity index 100%
rename from wela/examples/run_gr.py
rename to examples/run_gr.py
diff --git a/wela/examples/run_imageviewer.py b/examples/run_imageviewer.py
similarity index 100%
rename from wela/examples/run_imageviewer.py
rename to examples/run_imageviewer.py
diff --git a/old_data_analysis/align.py b/limbo/old_data_analysis/align.py
similarity index 100%
rename from old_data_analysis/align.py
rename to limbo/old_data_analysis/align.py
diff --git a/old_data_analysis/autoreg.py b/limbo/old_data_analysis/autoreg.py
similarity index 100%
rename from old_data_analysis/autoreg.py
rename to limbo/old_data_analysis/autoreg.py
diff --git a/old_data_analysis/crosscorr.py b/limbo/old_data_analysis/crosscorr.py
similarity index 100%
rename from old_data_analysis/crosscorr.py
rename to limbo/old_data_analysis/crosscorr.py
diff --git a/old_data_analysis/fft.py b/limbo/old_data_analysis/fft.py
similarity index 100%
rename from old_data_analysis/fft.py
rename to limbo/old_data_analysis/fft.py
diff --git a/old_data_analysis/fft_function.py b/limbo/old_data_analysis/fft_function.py
similarity index 100%
rename from old_data_analysis/fft_function.py
rename to limbo/old_data_analysis/fft_function.py
diff --git a/old_data_analysis/findpeaks.py b/limbo/old_data_analysis/findpeaks.py
similarity index 100%
rename from old_data_analysis/findpeaks.py
rename to limbo/old_data_analysis/findpeaks.py
diff --git a/old_data_analysis/standardscaler.py b/limbo/old_data_analysis/standardscaler.py
similarity index 100%
rename from old_data_analysis/standardscaler.py
rename to limbo/old_data_analysis/standardscaler.py
diff --git a/old_plotting/__init__.py b/limbo/old_plotting/__init__.py
similarity index 100%
rename from old_plotting/__init__.py
rename to limbo/old_plotting/__init__.py
diff --git a/old_plotting/boxplot.py b/limbo/old_plotting/boxplot.py
similarity index 100%
rename from old_plotting/boxplot.py
rename to limbo/old_plotting/boxplot.py
diff --git a/old_plotting/heatmap.py b/limbo/old_plotting/heatmap.py
similarity index 100%
rename from old_plotting/heatmap.py
rename to limbo/old_plotting/heatmap.py
diff --git a/old_plotting/histogram.py b/limbo/old_plotting/histogram.py
similarity index 100%
rename from old_plotting/histogram.py
rename to limbo/old_plotting/histogram.py
diff --git a/old_plotting/mean_plot.py b/limbo/old_plotting/mean_plot.py
similarity index 100%
rename from old_plotting/mean_plot.py
rename to limbo/old_plotting/mean_plot.py
diff --git a/old_plotting/median_plot.py b/limbo/old_plotting/median_plot.py
similarity index 100%
rename from old_plotting/median_plot.py
rename to limbo/old_plotting/median_plot.py
diff --git a/old_plotting/plot_utils.py b/limbo/old_plotting/plot_utils.py
similarity index 100%
rename from old_plotting/plot_utils.py
rename to limbo/old_plotting/plot_utils.py
diff --git a/old_plotting/plottingabc.py b/limbo/old_plotting/plottingabc.py
similarity index 100%
rename from old_plotting/plottingabc.py
rename to limbo/old_plotting/plottingabc.py
diff --git a/old_plotting/single_birth_plot.py b/limbo/old_plotting/single_birth_plot.py
similarity index 100%
rename from old_plotting/single_birth_plot.py
rename to limbo/old_plotting/single_birth_plot.py
diff --git a/old_plotting/single_plot.py b/limbo/old_plotting/single_plot.py
similarity index 100%
rename from old_plotting/single_plot.py
rename to limbo/old_plotting/single_plot.py
diff --git a/wela/__init__.py b/src/wela/__init__.py
similarity index 100%
rename from wela/__init__.py
rename to src/wela/__init__.py
diff --git a/wela/add_bud_fluorescence.py b/src/wela/add_bud_fluorescence.py
similarity index 100%
rename from wela/add_bud_fluorescence.py
rename to src/wela/add_bud_fluorescence.py
diff --git a/wela/autocrosscorr.py b/src/wela/autocrosscorr.py
similarity index 100%
rename from wela/autocrosscorr.py
rename to src/wela/autocrosscorr.py
diff --git a/wela/butterfilter.py b/src/wela/butterfilter.py
similarity index 100%
rename from wela/butterfilter.py
rename to src/wela/butterfilter.py
diff --git a/wela/correct_buds.py b/src/wela/correct_buds.py
similarity index 100%
rename from wela/correct_buds.py
rename to src/wela/correct_buds.py
diff --git a/wela/dataloader.py b/src/wela/dataloader.py
similarity index 100%
rename from wela/dataloader.py
rename to src/wela/dataloader.py
diff --git a/wela/figs2pdf.py b/src/wela/figs2pdf.py
similarity index 100%
rename from wela/figs2pdf.py
rename to src/wela/figs2pdf.py
diff --git a/wela/growth_rate.py b/src/wela/growth_rate.py
similarity index 100%
rename from wela/growth_rate.py
rename to src/wela/growth_rate.py
diff --git a/wela/imageviewer.py b/src/wela/imageviewer.py
similarity index 100%
rename from wela/imageviewer.py
rename to src/wela/imageviewer.py
diff --git a/wela/plotting.py b/src/wela/plotting.py
similarity index 100%
rename from wela/plotting.py
rename to src/wela/plotting.py
-- 
GitLab