diff --git a/2.Analysis/2_maxConnectedComponent/README.md b/2.Analysis/2_maxConnectedComponent/README.md index 107877dfa4f083550b2cd10eec31e385040f7967..659c7d57515bd16f4313482b4c10f284900a9427 100755 --- a/2.Analysis/2_maxConnectedComponent/README.md +++ b/2.Analysis/2_maxConnectedComponent/README.md @@ -1,10 +1,13 @@ # Largest connected component The script **bash\_maxCC.sh** contains the instructions to run the whole analysis in this folder: -I.- First, it executes the mathematica notebook **maxCComp.m** to read the network connectivity files produced in folder **1\_networkConnectivity/REP1/**. These files contain information about which DNAns (with moleculeID $m\in[0,N-1]$) is connected with any other DNAns. By runnig the mathematica notebook, you will create a file called *maxCC.txt* with columns: +**I.-** First, it executes the mathematica notebook **maxCComp.m** to read the network connectivity files produced in folder **1\_networkConnectivity/REP1/**. These files contain information about which DNAns (with moleculeID $m\in[0,N-1]$) is connected with any other DNAns. By runnig the mathematica notebook, you will create a file called *maxCC.txt* with columns: + * 1.- timestep. * 2.- The size (number of DNAns) in the largest connected component. -II.- Then, it removes the special characters *"* from the file *maxCC.txt* and rename it to: *maxCComp_rho0.02.txt* +Note that if you don't have X11 installed, you will need to open the Mathematica script (maxCComp.m) and run it as usual (shift+enter) to create the previous file. + +**II.-** Then, it removes the special characters *"* from the file *maxCC.txt* and rename it to: *maxCComp_rho0.02.txt* **Note:** The variables inside the mathematica notebook: The number (M) of nanostars, and the initial time (ti), time-frequency (dfreq) and last timestep (tl), need to be set accordingly to the system you are analysing.