diff --git a/README.md b/README.md index 1511bc05fba15fdd71f687b394f4ee785a66019c..daafc65e4832559da8f5ee9b801435bf648a0a16 100755 --- a/README.md +++ b/README.md @@ -9,6 +9,23 @@ Furtheremore, we will discuss how to: 3. Visualise the trajectory from simulations. 4. Analyse the output from simulations. +Please if you use any of the codes here, do not forget to cite this repository and the corresponding papers in the following links: + +[bead-spring polymer with Topo2](https://academic.oup.com/nar/article/50/8/4659/6574672) + +[dsDNA implementation](https://pubs.rsc.org/en/content/articlelanding/2016/sm/c6sm01859a) + +[dsDNA melting](https://journals.aps.org/prl/abstract/10.1103/PhysRevLett.119.118002) + +[dsDNA supercoling dynamics](https://www.pnas.org/doi/10.1073/pnas.1905215118) + +[oxDNA twist, roll, tilt deformations and dynamics](https://pubs.rsc.org/en/content/articlelanding/2021/sm/d0sm01812k) + +[oxDNA implementation into LAMMPS](https://link.springer.com/article/10.1140/epje/i2018-11669-8) + +[DNA nanostar with oxDNA](https://arxiv.org/abs/2202.06331) + + ## Requirements In this section you will find the software neccessary for this tutorial and instructions on how to install it. The tutorial assumes that a LAMMPS executable called **lmp\_mpi\_29Sep2021** exist into this folder (see below for installation).