Explore projects

Pre-processing scripts for DNMs from http://www.genemed.tech/gene4denovo/download - convert DNMs to BCF/VCF format for further analysis

Gauri's python scripts for mapping missense variants

Analysis of deletions in PCAWG ID4-positive tumours relative to TOP1-seq signal from Baranello et al. (2016): doi:10.1016/j.cell.2016.02.036

Genome wide analysis of emRiboSeq embedded ribonucleotide context preferences.

Pan-cancer analysis of deletion mutation patterns relative to genic transcription.

Configurable template for read alignment, processing and somatic variant calling using SGE cluster

Normalization and intersection of somatic variant calls from multiple callers

A public repo containing the scripts/config needed to interface with SOTR telemetry boxes etc.

CV for job

Temporary Test Project

Student materials for the Year 2 chemistry course "Data-Driven Chemistry" (DDC).

Attempts to discover how disclosive free text iss

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.