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Simulation and analysis for a model coupling 3D chromatin structure and transcriptional dynamics

software testing for ILP program

A record of the code and analysis reported in Anderson et al, 2024 to investigate the strand specificity of DNA damage, repair and its subsequent mutagenicity. This code is not intended as a generalisable and portable software package, rather serves to allow for reproduction of the reported analyses. Code within the repository could be adapted for more generalised analysis and has been licensed to allow this.

Slides on algebraic statistics for The University of Edinburgh/Heriot-Watt University joint postgraduate colloquium. . Given on the 6th November 2020.

Sage Jupyter notebook with interactive plots to quickly see Gamma, Theta curves and maybe lambda+tilt walls

This project is a collection of materials for the ARCHER2 LAMMPS course, first run on the 4th-18th May 2020.

Student versions of Data-driven chemistry session 6.

Analysing the supplementary data of Campbell et al. (2020) PNAS. [https://doi.org/10.1073/pnas.1919535117]