Explore projects

Contains ruffus pipelines for running the entire single-end or paired-end CRAC pipelines.

In development: Visualize clusterings at different resolutions

Introduction to Python aimed for beginners

End-to-end automated processing of live-cell imaging data.

Here you will find the c++ codes and LAMMPS scripts to run simulations of the topological relaxation of bead-spring polymers (which are initially knotted) by the action of a simulated TopoII protein.

Ab Initio Augmented Structure Solving Engine

Hybrid methodology combining Empirical Potential-based Structure Refinement (EPSR) fitting of total scattering data with first-principles quantum mechanical calculations (Density Functional Theory).