Explore projects

Various scripts and utilities

Repository for launching the baal-nf pipeline on deeply sequenced CLIP-seq samples

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Mitochondrial variant caller benchmarking for low coverage single-cell RNA-Seq data.

Examples to support our Slurm Compute Cluster documentation: www.ph.ed.ac.uk/slurm

Comparison of PCAWG "TNT" deletion rates vs housekeeping gene expression.

Classes for making Genomebrowser snapshots

TensorFlow Tutorials with YouTube Videos

To run TensorFlow on a single machine, and will train a simple classifier to classify images of flowers.

This is the exercise on Convolutions for Computer Vision

Face Recognition using OpenCV and Python.

Code to reproduce the experiments presented in: Neonatal morphometric similarity mapping for predicting brain age and characterizing neuroanatomic variation associated with preterm birth. DOI: https://doi.org/10.1016/j.nicl.2020.102195

Learn OpenCV : C++ and Python Examples

A record of the code and analysis reported in Anderson et al, 2024 to investigate the strand specificity of DNA damage, repair and its subsequent mutagenicity. This code is not intended as a generalisable and portable software package, rather serves to allow for reproduction of the reported analyses. Code within the repository could be adapted for more generalised analysis and has been licensed to allow this.

PlanArt is a modular software for testing and comparing computational models of human speech articulation planning.