Explore projects

Interactive javascript to demonstrate basic principles of impedance spectroscopy using a pipe/water analogy.

nextflow_openstack setup files

Analysing the supplementary data of Campbell et al. (2020) PNAS. [https://doi.org/10.1073/pnas.1919535117]

Geometric descriptors of knotted and linked arcs

Managing rpm and apt LCFG package lists

Code using dirichlet-multinomial distribution as a null model for assessing significance of cosine similarities of mutation spectra of differing dimensions

use matlab to plot cadence .csv

General utility functions

Codes to simulate recoloring of a polymer based on competing epigenetic marks.

This is a repo for codes to simulate trans-grabbing loop extrusion factors (developed by Andrea Bonato)

Codes to simulate condensins and loop extruders that can grab polymer segments in 3D. Developed by Andrea Bonato

Codes to simulate DNA integration in DNA braids.

Codes to run "superstructure" a modified version of DBSCAN. See https://rupress.org/jcb/article/220/5/e202010003/211893/Parameter-free-molecular-super-structures

Codes to model melts of supercoiled DNA plasmids

Ideally, software privacy assistants can help by making privacy decisions in different situations on behalf of the users. To realize this, we propose an agent-based model for a privacy assistant.