Explore projects

Configurable template for read alignment, processing and somatic variant calling using SGE cluster

Attempts to discover how disclosive free text iss

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

B202641-PSAssessment1-Refactoring

Annotator for Cell Microscopy Experiments.

Estimates the mutual information between a collection of time series and a list of labels, where each label is associated with one set of time series and all labels are equally likely.

Read alignment, processing and variant calling scripts for mouse KO tumour/normal pairs

mtDNA variant calling using mapping quality for NUMT removal

Client utilities for interacting with OpenCGA