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Codes to simulate recoloring of a polymer based on competing epigenetic marks.

This is a repo for codes to simulate trans-grabbing loop extrusion factors (developed by Andrea Bonato)

Codes to simulate condensins and loop extruders that can grab polymer segments in 3D. Developed by Andrea Bonato

Codes to simulate DNA integration in DNA braids.

Codes to run "superstructure" a modified version of DBSCAN. See https://rupress.org/jcb/article/220/5/e202010003/211893/Parameter-free-molecular-super-structures

Codes to model melts of supercoiled DNA plasmids

Ideally, software privacy assistants can help by making privacy decisions in different situations on behalf of the users. To realize this, we propose an agent-based model for a privacy assistant.

Create a list of reports from a directory that meet a set of parameters

Supporting materials for WHO EQA 2021

Extension to "real" app (command-line Java application to parse and execute Relational Algebra queries) which tries to determine whether a query preserves the Codd semantics.

chnfsv4acl is a tool for creating and applying GPFS NFSv4 ACLs to files and directories, either individually or recursively.